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Preprints
- Berthet, Beatrice., Bald, L., Louveaux, M., and Maizel, A. (2022). Progressive maturation of the root apical meristem in Arabidopsis thaliana lateral roots. BioRxiv.
- Stitz, Michael., Kuster, D., Reinert, M., Schepetilnikov, M., Berthet, B., Janocha, D., Artins, A., Boix, M., Henriques, R., Pfeiffer, A., Lohmann, J., Gaquerel, E., Maizel, A. (2022). TOR acts as metabolic gatekeeper for auxin-dependent lateral root initiation in Arabidopsis thaliana. BioRxiv.
Projects publications
2023
2022
- Athul Vijayan, Soeren Strauss, Rachele Tofanelli, Tejasvinee Atul Mody, Karen Lee, Miltos Tsiantis, Richard S Smith, Kay Schneitz, The annotation and analysis of complex 3D plant organs using 3DCoordX, Plant Physiology, (2022), kiac145, https://doi.org/10.1093/plphys/kiac145
- Stöckle, D., Reyes-Hernández, B.J., Barro, A.V., Nenadić, M., Winter, Z., Marc-Martin, S., Bald, L., Ursache, R., Fujita, S., Maizel, A., et al. (2022). Microtubule-based perception of mechanical conflicts controls plant organ morphogenesis. Sci Adv 8, eabm4974. 10.1126/sciadv.abm4974.
- Sören Strauss, Adam Runions, Brendan Lane, Dennis Eschweiler, Namrata Bajpai, Nicola Trozzi, Anne-Lise Routier-Kierzkowska, Saiko Yoshida, Sylvia Rodrigues da Silveira, Athul Vijayan, Rachele Tofanelli, Mateusz Majda, Emillie Echevin, Constance Le Gloanec, Hana Bertrand-Rakusova, Milad Adibi, Kay Schneitz, George W Bassel, Daniel Kierzkowski, Johannes Stegmaier, Miltos Tsiantis, Richard S Smith (2022) Using positional information to provide context for biological image analysis with MorphoGraphX 2.0 eLife 11:e72601
- Wolny, A., Yu, Q., Pape,. C., Kreshuk., A. (2022). Sparse Object-level Supervision for Instance Segmentation with Pixel Embeddings. CVPR2022
2021
- Vijayan, A., Tofanelli, R., Strauss, S., Cerrone, L., Wolny, A., Strohmeier, J., Kreshuk, A., Hamprecht, F., Smith, R. and Schneitz, K., 2021. A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule. eLife (2021);10:e63262 DOI: 10.7554/eLife.63262
- D. Ramos, J.R., Maizel, A. & Alim, K. Tissue-wide integration of mechanical cues promotes effective auxin patterning. Eur. Phys. J. Plus 136, 250 (2021). https://doi.org/10.1140/epjp/s13360-021-01204-6
- Lilli Marie Schütz, Marion Louveaux, Amaya Vilches Barro, Sami Bouziri, Lorenzo Cerrone, Adrian Wolny, Anna Kreshuk, Fred A Hamprecht, Alexis Maizel, Integration of Cell Growth and Asymmetric Division During Lateral Root Initiation In Arabidopsis thaliana, Plant and Cell Physiology, (2021). pcab038, https://doi.org/10.1093/pcp/pcab038
2020
- Chaudhary, A., Chen, X., Gao, J., Leśniewska, B., Hammerl, R., Dawid, C. and Schneitz, K. (2020). The receptor kinase STRUBBELIG promotes the response to cellulose deficiency in Arabidopsis thaliana. PLoS Genetics
- Galvan-Ampudia, Carlos S, Guillaume Cerutti, Jonathan Legrand, Géraldine Brunoud, Raquel Martin-Arevalillo, Romain Azais, and Vincent Bayle et al. (2020). Temporal Integration Of Auxin Information For The Regulation Of Patterning. Elife 9. doi:10.7554/elife.55832.
- Escamez, S., André, D., Sztojka, B., Bollhöner, B., Hall, H., Berthet, B., Voß, U., Lers, A., Maizel, A., Andersson, M., et al. (2020). Cell Death in Cells Overlying Lateral Root Primordia Facilitates Organ Growth in Arabidopsis. Current Biology S0960982219315805.
- Wolny, A., Cerrone, L., Vijayan, A., Barro, A. V., Louveaux, M., Wenzl, C., Strauss, S., Wilson-Sanchéz, W., Lymbouridou, R., Steigleder, S., Pape, et al. (2020). “Accurate And Versatile 3D Segmentation Of Plant Tissues At Cellular Resolution.” Elife 9. doi: 10.7554/eLife.57613
2019
- Berg, S., Kutra, D., Kroeger, T., Straehle, C.N., Kausler, B.X., Haubold, C., Schiegg, M., Ales, J., Beier, T., Rudy, M., et al. (2019). ilastik: interactive machine learning for (bio)image analysis. Nat Methods.
- Cerrone, L., Zeilmann, A., and Hamprecht, F.A. (2019). End-To-End Learned Random Walker for Seeded Image Segmentation. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition pp. 12559–12568.
- Khadka, J., Julien, J.-D., Alim, K. (2019) Feedback from tissue mechanics self-organizes efficient outgrowth of plant organ. Biophysical Journal
- Kierzkowski, D., Runions, A., Vuolo, F., Strauss, S., Lymbouridou, R., Routier-Kierzkowska, A.-L., Wilson-Sánchez, D., Jenke, H., Galinha, C., Mosca, G., et al. (2019). A Growth-Based Framework for Leaf Shape Development and Diversity. Cell 177, 1405-1418.e17.
- Pape, C., Matskevych, A., Wolny, A., Hennies, J., Mizzon, G., Louveaux, M., Musser, J., Maizel, A., Arendt, D., Kreshuk, A. (2019). Leveraging Domain Knowledge to Improve Microscopy Image Segmentation with Lifted Multicuts. Frontiers in Computer Science.
- Ramakrishna, P., Duarte, P.R., Rance, G.A., Schubert, M., Vordermaier, V., Vu, L.D., Murphy, E., Barro, A.V., Swarup, K., Moirangthem, K., et al. (2019). EXPANSIN A1-mediated radial swelling of pericycle cells positions anticlinal cell divisions during lateral root initiation. PNAS 116, 8597–8602.
- Tofanelli, R., Vijayan, A., Scholz, S., and Schneitz, K. (2019). Protocol for rapid clearing and staining of fixed Arabidopsis ovules for improved imaging by confocal laser scanning microscopy. Plant Methods 15, 120.
- Vilches Barro, A., Stöckle, D., Thellmann, M., Ruiz-Duarte, P., Bald, L., Louveaux, M., von Born, P., Denninger, P., Goh, T., Fukaki, H., et al. (2019). Cytoskeleton Dynamics Are Necessary for Early Events of Lateral Root Initiation in Arabidopsis. Current Biology 29, 2443-2454.e5.
2018
- Chaudhary, A., Gao, J. and Schneitz, K. (2018). The genetic control of ovule development. Reference Module in Life Sciences, doi:10.1016/B978-0-12-809633-8.20737-1.
- Vuolo, F., Kierzkowski, D., Runions, A., Hajheidari, M., Mentink, R.A., Gupta, M.D., Zhang, Z., Vlad, D., Wang, Y., Pecinka, A., et al. (2018). LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev. 32, 1361–1366.
2017
Related publications
- Galvan-Ampudia CS, Cerutti G, Legrand J, Brunoud G, Martin-Arevalillo R, Azais R, Bayle V, Moussu S, Wenzl C, Jaillais Y, Lohmann JU, Godin C, Vernoux T. Temporal integration of auxin information for the regulation of patterning. Elife. 2020 May 7;9:e55832. doi: 10.7554/eLife.55832.
- Mergner, J., Frejno, M., List, M., Papacek, M., Chen, X., Chaudhary, A., Samara, P., Richter, S., Shikata, H., Messerer, M., Lang, D., Altmann, S., Cyprys, P., Zolg, D., Mathieson, T., Bantscheff, M., Hazarika, R., Dawid, C., Dunkel, A., Hofmann, T., Sprunck, S., Falter-Braun, P., Johannes, F., Mayer, K., Jürgens, G., Wilhelm, M., Baumbach, J., Grill, E., Schneitz, K., Schwechheimer, C. and Küster, B. (2020). “Mass-spectrometry-based draft of the Arabidopsis proteome.” Nature.
- Thomas Montenegro-Johnson, Soeren Strauss, Matthew DB Jackson, Liam Walker, Richard S Smith, George W Bassel (2019) 3DCellAtlas Meristem: a tool for the global cellular annotation of shoot apical meristems. Plant Methods, 15:1.
- Sapala, A., Runions, A., Routier-Kierzkowska, A.-L., Das Gupta, M., Hong, L., Hofhuis, H., Verger, S., Mosca, G., Li, C.-B., Hay, A., Hamant, O., Roeder, A., Tsiantis, M., Prusinkiewicz, R., & Smith, R. S. (2018). Why plants make puzzle cells, and how their shape emerges. eLife, 7: e32794.
- Scholz, S., Pleßmann, J., Enugutti, B., Hüttl, R., Wassmer, K. and Schneitz, K. (2019). The AGC protein kinase UNICORN controls planar growth by attenuating PDK1 in Arabidopsis thaliana. PLoS Genet, 15: e1007927