Publications

Preprints

• Ramos, J. R. D., Maizel, A., Alim, K. (2019) Tissue-wide integration of mechanical cues promotes efficiency of auxin patterning. bioRxiv.

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Projects publications

2019

• Berg, S., Kutra, D., Kroeger, T., Straehle, C.N., Kausler, B.X., Haubold, C., Schiegg, M., Ales, J., Beier, T., Rudy, M., et al. (2019). ilastik: interactive machine learning for (bio)image analysis. Nat Methods.
• Cerrone, L., Zeilmann, A., and Hamprecht, F.A. (2019). End-To-End Learned Random Walker for Seeded Image Segmentation. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition pp. 12559–12568.
• Khadka, J., Julien, J.-D., Alim, K. (2019) Feedback from tissue mechanics self-organizes efficient outgrowth of plant organ. Biophysical Journal
• Kierzkowski, D., Runions, A., Vuolo, F., Strauss, S., Lymbouridou, R., Routier-Kierzkowska, A.-L., Wilson-Sánchez, D., Jenke, H., Galinha, C., Mosca, G., et al. (2019). A Growth-Based Framework for Leaf Shape Development and Diversity. Cell 177, 1405-1418.e17.
• Pape, C., Matskevych, A., Wolny, A., Hennies, J., Mizzon, G., Louveaux, M., Musser, J., Maizel, A., Arendt, D., Kreshuk, A. (2019). Leveraging Domain Knowledge to Improve Microscopy Image Segmentation with Lifted Multicuts. Frontiers in Computer Science.
• Ramakrishna, P., Duarte, P.R., Rance, G.A., Schubert, M., Vordermaier, V., Vu, L.D., Murphy, E., Barro, A.V., Swarup, K., Moirangthem, K., et al. (2019). EXPANSIN A1-mediated radial swelling of pericycle cells positions anticlinal cell divisions during lateral root initiation. PNAS 116, 8597–8602.
• Tofanelli, R., Vijayan, A., Scholz, S., and Schneitz, K. (2019). Protocol for rapid clearing and staining of fixed Arabidopsis ovules for improved imaging by confocal laser scanning microscopy. Plant Methods 15, 120.
• Vilches Barro, A., Stöckle, D., Thellmann, M., Ruiz-Duarte, P., Bald, L., Louveaux, M., von Born, P., Denninger, P., Goh, T., Fukaki, H., et al. (2019). Cytoskeleton Dynamics Are Necessary for Early Events of Lateral Root Initiation in Arabidopsis. Current Biology 29, 2443-2454.e5.

2018

• Chaudhary, A., Gao, J. and Schneitz, K. (2018). The genetic control of ovule development. Reference Module in Life Sciences, doi:10.1016/B978-0-12-809633-8.20737-1.
• Vuolo, F., Kierzkowski, D., Runions, A., Hajheidari, M., Mentink, R.A., Gupta, M.D., Zhang, Z., Vlad, D., Wang, Y., Pecinka, A., et al. (2018). LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev. 32, 1361–1366.

2017

• Runions, A. and Tsiantis, M. (2017), The shape of things to come: From typology to predictive models for leaf diversity. American Journal of Botany, 104: 1437-1441.

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Related publications

• Thomas Montenegro-Johnson, Soeren Strauss, Matthew DB Jackson, Liam Walker, Richard S Smith, George W Bassel (2019) 3DCellAtlas Meristem: a tool for the global cellular annotation of shoot apical meristems. Plant Methods, 15:1.
• Sapala, A., Runions, A., Routier-Kierzkowska, A.-L., Das Gupta, M., Hong, L., Hofhuis, H., Verger, S., Mosca, G., Li, C.-B., Hay, A., Hamant, O., Roeder, A., Tsiantis, M., Prusinkiewicz, R., & Smith, R. S. (2018). Why plants make puzzle cells, and how their shape emerges. eLife, 7: e32794.
• Scholz, S., Pleßmann, J., Enugutti, B., Hüttl, R., Wassmer, K. and Schneitz, K. (2019). The AGC protein kinase UNICORN controls planar growth by attenuating PDK1 in Arabidopsis thaliana. PLoS Genet, 15: e1007927